Bhagwan Bahubali Temple, covering an area of around 4000 sq. feet, is also an attraction of Mangalayatan complex. The temple houses have a standing white marble statue of Bhagwan Bahubali. The 7’3" high statue stands on a 24" high lotus platform. The temple also has a statutes of Muniraj Bahubali and Muniraj Bharat in standing postures.

Design of Bahubali Temple is the same as the Mahavir Temple. The hall of the temple is adorned with portraits of Dharsenacharyadev and Muniraj Padmaprabhamaldharidev. These portraits are engraved on 4′ x 4.5′ sized marble panels. Marble slabs of 4′ x 2′ size, engraved with the text of the 7th Adhikar (chapter) of Acharyakalpa Pt. Todarmalji written Shri Mokshamarga-prakashak and Pt. Daulatramji written Shri Chheh-dhala, has been fixed on the walls of the temple.

The Bahubali Temple will also house a small library and a research institute until spacious individual buildings, proposed to be built in the second phase of development.